Pathomx: Example Analysis

Short demo of an experimental analysis of metabolomic (NMR) data using Pathomx. Metabolomic test dataset produced from THP-1 cells grown under normal and hypoxic conditions. Spectra (2D 1H JRES) have been pre-processed and quantified using the BML-NMR service.

The video shows an example analysis from processed data through to metabolic pathways and PLS-DA outputs.

Pathomx is an open-source workflow-based scientific analysis application. Source code is available here with packaged binaries and paper to follow shortly. More information is available on this site.

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Pathomx: Analysis of public GEO datasets  science

This short demo shows analysis of a publically available GEO dataset using Pathomx, with a workflow build using the new visual editor (available in the next release). You can download the example dataset from here: http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS1065 Pathomx is an open-source workflow-based … More